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If you are a pizza lover or focaccia lover, you have got to try this Margherita Pizza Sourdough Focaccia. It is packed with flavor and reminiscent of a margherita pizza with its toppings: garlic oil, marinara sauce, mozzarella cheese, and fresh basil. A fresh and easy summer dinner that the whole family will love.

Did you know you could replace the water in your dough with other liquids? I recently started a new series on my Instagram where I try different liquids in focaccia. It all started with my viral Salsa Sourdough Focaccia, which, by the way, is a must-try! But so many of you asked to do marinara sauce next that I just had to try it, and all I can say is wow! The marinara adds so much flavor to the sourdough focaccia, making for a delicious tomato based bread.
Table of Contents
- Replacing water with marinara sauce
- What is focaccia bread?
- Tools for this sourdough focaccia recipe
- Tips for making Margherita Pizza Sourdough Focaccia
- Ingredients for Margherita Pizza Sourdough Focaccia
- Instructions to make Margherita Pizza Sourdough Focaccia
- How to store focaccia bread
- Margherita Pizza Sourdough Focaccia Recipe
Replacing water with marinara sauce
Now you may be wondering how replacing water with marinara sauce impacts the focaccia. Marinara sauce is highly acidic due to the tomatoes. Acidity weakens the gluten structure of the dough, which means this focaccia will not rise as well as a typical sourdough focaccia. However, the flavor is so good that it’s worth losing a little bit of height. And honestly, it still has a really nice texture even though it is not as big and fluffy. But you can always replace the marinara sauce with water in this recipe if you prefer a fluffier focaccia and make my Easy Sourdough Focaccia recipe.

What is focaccia bread?
Focaccia can be described as a type of Italian flatbread and it is made similar to how pizza dough is made. The bread is made in a flat pan, usually something like a 9×13 dish or round cast iron pan. The bread is fluffy and chewy with a thin crispy crust. It has signature dimples in the dough and has a drizzle of olive oil to help create the crispy, golden brown crust. Focaccia can either be made plain or with different toppings like cheese, herbs, and vegetables.
If you love this recipe, be sure to checkout my other sourdough focaccia flavors and try recipes such as Pesto Sourdough Focaccia, Cheesy Sourdough Focaccia, Sticky Pecan Sourdough Focaccia or Hot Chocolate Sourdough Focaccia.
Tools for this sourdough focaccia recipe
9×13 pan or 12″ cast iron skillet– A 9×13 pan will result in a thinner pan whereas a cast-iron skillet will result in a thicker focaccia.
Kitchen Scale– When making sourdough bread, I always recommend weighing your ingredients on a kitchen scale for more accurate measurements.
Tips for making Margherita Pizza Sourdough Focaccia
- Let the dough get puffy and rise fully. Baking it too early will result in a denser focaccia.
- To speed up the process, find a warmer spot for the dough to rise.
- If you want to bake the next day, after the dough is placed in the pan cover it and place it in the fridge. Let it come to room temperature and get puffy before baking.

Ingredients for Margherita Pizza Sourdough Focaccia
- Marinara sauce– Any type of marinara sauce will work so just use your favorite brand.
- Garlic salt – I use garlic salt instead of regular salt to add extra flavor but you can always use plain salt instead.
- Sourdough starter – Use an active starter that is bubbly and doubled in size.
- Bread flour – I prefer using bread flour when baking any type of sourdough bread as it is stronger and can absorb more liquid.
- Garlic Oil – This will infuse more of the garlic flavor into the bread and give it a crispy golden brown crust. You can always replace this with olive oil.
- Top with mozzarella cheese and fresh basil.
Instructions to make Margherita Pizza Sourdough Focaccia
To make the dough, mix the marinara sauce, garlic salt, sourdough starter, and bread flour together in a large bowl until combined in a shaggy dough.
Let the dough sit covered at room temperature for about 30 minutes.
Perform a set of stretch and folds. To stretch and fold the dough, grab one side of the dough with a damp hand and gently shimmy the dough up and then fold it on itself. Repeat this 3 more times rotating the bowl 90 degrees each time. Repeat this one or 2 more times with 30 minutes in between each set.

After you finished the stretch and folds, let the dough rise in a warm spot until the dough has risen 50% in size. This typically takes about 5 hours from when the dough is mixed at 75 degrees Fahrenheit.

Spray a 9×13 pan with non-stick spray and add 2 Tbsp of garlic oil or olive oil. Dump the focaccia dough into the pan. For the second proof, let the dough rise for another hour or two until it is puffy and mostly fills the pan.

Add ¼ cup olive oil, ¼ cup marinara sauce, and chunks of mozzarella cheese to the top of the dough. Then using the tips of your fingers press down into the dough stretching it to fill the pan and dimpling it, creating craters in the dough.

Bake in a 425F degree oven for about 25-30 minutes until golden brown and baked through.
Remove the bread from the pan and let cool on a cooling rack. Slice & enjoy!
How to store focaccia bread
Store the bread in an airtight container in the fridge for 5-7 days. When you are ready to eat it again, you can warm it up in the microwave or for a crisp crust place it in the oven or air fryer for a few minutes at 400F.
You can also freeze the focaccia by wrapping it in foil or adding it to a freezer-safe bag. It will stay good for up to two months. To enjoy it again, let it defrost and then you can add it to a 400-degree oven for a few minutes until it gets warm and the outside is crispy.

Margherita Pizza Sourdough Focaccia
Equipment
Ingredients
- 400 grams marinara sauce, 1 ¾ cups
- 10 grams garlic salt, 1 ½ teaspoon
- 150 grams sourdough starter, active and bubbly, ½ cup + 2 Tablespoons
- 500 grams bread flour, 3 ⅔ cups
For topping:
- 60 grams garlic oil or olive oil, divided, ¼ cup
- 60 grams marinara sauce, ¼ cup
- 115 grams mozzarella cheese, 1 cup
- Fresh basil leaves
Instructions
- Mix together 400 grams of marinara sauce, sourdough starter, and garlic salt, creating a milky consistency.400 grams marinara sauce, 150 grams sourdough starter, active and bubbly, 10 grams garlic salt
- Add in bread flour and mix with a dough whisk or by hand until a shaggy dough is formed and the flour is incorporated. Cover the dough and let it sit at room temperature, ideally in the 77-85F range.500 grams bread flour
- About 30 minutes later, perform a set of stretch and folds by lifting the dough up and then bring the dough on top of itself. Repeat this motion 3 more times rotating the bowl 90 degrees each time. This is one set. Repeat this 1-2 more times with 30 minutes in between each set.
- Let the dough rise until it has risen 50% in size. Typically from the time it is made to when it is ready it takes about 5 hours.
- Spray a 9×13" pan with non-stick spray and then add 2 Tablespoons of garlic oil or olive oil to the pan. Dump the dough into the pan and cover. Let the dough rise for another hour or two until puffy and mostly fills the pan.
- Add the additional 2 Tablespoons of olive or garlic oil to the top of the dough. Then add 1/4 cup marinara sauce and 115 grams of mozzarella cheese in chunks. You can always add more or less depending on your preferences. Using the tips of your finger press down into the dough stretching it to fill the pan and dimpling it, creating craters in the dough.60 grams marinara sauce, 115 grams mozzarella cheese
- Bake at 425F for about 25-30 minutes until golden brown and baked through.
- Remove from the pan and let cool on a cooling rack. Top with fresh basil.Fresh basil leaves
Notes
- If you can't bake right away, once the dough is in the pan place it in the fridge covered for no more than 18 hours. Remove the pan from the fridge and let the dough rise on the counter until puffy. Dimple the dough and add the toppings.
- If you use a cast iron pan the dough will be thicker and will need to bake longer. Expect it to take about 40 minutes instead.
Nutrition
Nutrition information is automatically calculated, so should only be used as an approximation.
i used a cast iron skillet and missed taking it out at the end to cool so it was slightly overcooked. it was very good but because of the high baking temp and the extra time for the cast iron, the cheese was very dark. I’d recommend adding the cheese half way thru the baking process of you want it kinda melty vs crunchy. How do you store leftovers?
Thanks for the feedback Sarina!
Ok, I NEVER write reviews peeps, but this is soooo deserving of one I have to rave about it on here to ppl who will appreciate it 🥰 I’ve never made Focaccia before because I didn’t think I’d be a fan to be honest. But I was mistaken, big time!!! I used what I had in my house so I altered it to using spicey red pepper pasta sauce, habanero cheese, tons of pepperoni, olive oil and topped it off with basil!!! Glorified deep dish pizza!!! Hubby and I both absolutely LOVED IT! Thanks so much for sharing the recipe we are extremely grateful 🙏
Thanks so much Anita! I’m so glad you liked it.
How long in between the stretch and folds after the initial one? I am making this now…so it won’t help…but would be good to know going forward. Thanks! So far it smells great, lol.
About 30 minutes in between.
The instructions only indicate one set of stretch and folds – is there supposed to be multiple?
I will fix that typically I try to do 2-3 sets although if I can only get in one set it still turns out well.
I’m a rookie- but how does doing extra sets change the bread? Texture?
Im a rookie- but how does doing extra sets change the bread? Texture?
Doing my final proof now. I only have shredded mozzarella, so hopefully it turns out OK!
It helps strengthen the dough which can help create an fluffier bread. Hope it went well!